Omics / Client / create_annotation_store

create_annotation_store

Omics.Client.create_annotation_store(**kwargs)

Creates an annotation store.

See also: AWS API Documentation

Request Syntax

response = client.create_annotation_store(
    reference={
        'referenceArn': 'string'
    },
    name='string',
    description='string',
    tags={
        'string': 'string'
    },
    sseConfig={
        'type': 'KMS',
        'keyArn': 'string'
    },
    storeFormat='GFF'|'TSV'|'VCF',
    storeOptions={
        'tsvStoreOptions': {
            'annotationType': 'GENERIC'|'CHR_POS'|'CHR_POS_REF_ALT'|'CHR_START_END_ONE_BASE'|'CHR_START_END_REF_ALT_ONE_BASE'|'CHR_START_END_ZERO_BASE'|'CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader': {
                'string': 'string'
            },
            'schema': [
                {
                    'string': 'LONG'|'INT'|'STRING'|'FLOAT'|'DOUBLE'|'BOOLEAN'
                },
            ]
        }
    }
)

Parameters:

• reference (dict) –

  The genome reference for the store’s annotations.

  Note

  This is a Tagged Union structure. Only one of the following top level keys can be set: referenceArn.

  • referenceArn (string) –

    The reference’s ARN.

• name (string) – A name for the store.

• description (string) – A description for the store.

• tags (dict) –

  Tags for the store.

  • (string) –

    • (string) –

• sseConfig (dict) –

  Server-side encryption (SSE) settings for the store.

  • type (string) – [REQUIRED]

    The encryption type.

  • keyArn (string) –

    An encryption key ARN.

• storeFormat (string) –

  [REQUIRED]

  The annotation file format of the store.

• storeOptions (dict) –

  File parsing options for the annotation store.

  Note

  This is a Tagged Union structure. Only one of the following top level keys can be set: tsvStoreOptions.

  • tsvStoreOptions (dict) –

    File settings for a TSV store.

    • annotationType (string) –

      The store’s annotation type.

    • formatToHeader (dict) –

      The store’s header key to column name mapping.

      • (string) –

        • (string) –

    • schema (list) –

      The store’s schema.

      • (dict) –

        • (string) –

          • (string) –

Return type:

dict

Returns:

Response Syntax

{
    'id': 'string',
    'reference': {
        'referenceArn': 'string'
    },
    'storeFormat': 'GFF'|'TSV'|'VCF',
    'storeOptions': {
        'tsvStoreOptions': {
            'annotationType': 'GENERIC'|'CHR_POS'|'CHR_POS_REF_ALT'|'CHR_START_END_ONE_BASE'|'CHR_START_END_REF_ALT_ONE_BASE'|'CHR_START_END_ZERO_BASE'|'CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader': {
                'string': 'string'
            },
            'schema': [
                {
                    'string': 'LONG'|'INT'|'STRING'|'FLOAT'|'DOUBLE'|'BOOLEAN'
                },
            ]
        }
    },
    'status': 'CREATING'|'UPDATING'|'DELETING'|'ACTIVE'|'FAILED',
    'name': 'string',
    'creationTime': datetime(2015, 1, 1)
}

Response Structure

• (dict) –

  • id (string) –

    The store’s ID.

  • reference (dict) –

    The store’s genome reference. Required for all stores except TSV format with generic annotations.

    Note

    This is a Tagged Union structure. Only one of the following top level keys will be set: referenceArn. If a client receives an unknown member it will set SDK_UNKNOWN_MEMBER as the top level key, which maps to the name or tag of the unknown member. The structure of SDK_UNKNOWN_MEMBER is as follows:

    'SDK_UNKNOWN_MEMBER': {'name': 'UnknownMemberName'}
    

    • referenceArn (string) –

      The reference’s ARN.

  • storeFormat (string) –

    The annotation file format of the store.

  • storeOptions (dict) –

    The store’s file parsing options.

    Note

    This is a Tagged Union structure. Only one of the following top level keys will be set: tsvStoreOptions. If a client receives an unknown member it will set SDK_UNKNOWN_MEMBER as the top level key, which maps to the name or tag of the unknown member. The structure of SDK_UNKNOWN_MEMBER is as follows:

    'SDK_UNKNOWN_MEMBER': {'name': 'UnknownMemberName'}
    

    • tsvStoreOptions (dict) –

      File settings for a TSV store.

      • annotationType (string) –

        The store’s annotation type.

      • formatToHeader (dict) –

        The store’s header key to column name mapping.

        • (string) –

          • (string) –

      • schema (list) –

        The store’s schema.

        • (dict) –

          • (string) –

            • (string) –

  • status (string) –

    The store’s status.

  • name (string) –

    The store’s name.

  • creationTime (datetime) –

    When the store was created.

Exceptions

• Omics.Client.exceptions.InternalServerException

• Omics.Client.exceptions.ServiceQuotaExceededException

• Omics.Client.exceptions.ThrottlingException

• Omics.Client.exceptions.ValidationException

• Omics.Client.exceptions.ConflictException

• Omics.Client.exceptions.ResourceNotFoundException

• Omics.Client.exceptions.AccessDeniedException