get_read_set_metadata

get_read_set_metadata(**kwargs)

Gets details about a read set.

See also: AWS API Documentation

Request Syntax

response = client.get_read_set_metadata(
    id='string',
    sequenceStoreId='string'
)
Parameters
  • id (string) --

    [REQUIRED]

    The read set's ID.

  • sequenceStoreId (string) --

    [REQUIRED]

    The read set's sequence store ID.

Return type

dict

Returns

Response Syntax

{
    'arn': 'string',
    'creationTime': datetime(2015, 1, 1),
    'description': 'string',
    'fileType': 'FASTQ'|'BAM'|'CRAM',
    'files': {
        'index': {
            'contentLength': 123,
            'partSize': 123,
            'totalParts': 123
        },
        'source1': {
            'contentLength': 123,
            'partSize': 123,
            'totalParts': 123
        },
        'source2': {
            'contentLength': 123,
            'partSize': 123,
            'totalParts': 123
        }
    },
    'id': 'string',
    'name': 'string',
    'referenceArn': 'string',
    'sampleId': 'string',
    'sequenceInformation': {
        'alignment': 'string',
        'generatedFrom': 'string',
        'totalBaseCount': 123,
        'totalReadCount': 123
    },
    'sequenceStoreId': 'string',
    'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED',
    'subjectId': 'string'
}

Response Structure

  • (dict) --

    • arn (string) --

      The read set's ARN.

    • creationTime (datetime) --

      When the read set was created.

    • description (string) --

      The read set's description.

    • fileType (string) --

      The read set's file type.

    • files (dict) --

      The read set's files.

      • index (dict) --

        The files' index.

        • contentLength (integer) --

          The file's content length.

        • partSize (integer) --

          The file's part size.

        • totalParts (integer) --

          The file's total parts.

      • source1 (dict) --

        The location of the first file in Amazon S3.

        • contentLength (integer) --

          The file's content length.

        • partSize (integer) --

          The file's part size.

        • totalParts (integer) --

          The file's total parts.

      • source2 (dict) --

        The location of the second file in Amazon S3.

        • contentLength (integer) --

          The file's content length.

        • partSize (integer) --

          The file's part size.

        • totalParts (integer) --

          The file's total parts.

    • id (string) --

      The read set's ID.

    • name (string) --

      The read set's name.

    • referenceArn (string) --

      The read set's genome reference ARN.

    • sampleId (string) --

      The read set's sample ID.

    • sequenceInformation (dict) --

      The read set's sequence information.

      • alignment (string) --

        The sequence's alignment setting.

      • generatedFrom (string) --

        Where the sequence originated.

      • totalBaseCount (integer) --

        The sequence's total base count.

      • totalReadCount (integer) --

        The sequence's total read count.

    • sequenceStoreId (string) --

      The read set's sequence store ID.

    • status (string) --

      The read set's status.

    • subjectId (string) --

      The read set's subject ID.

Exceptions

  • Omics.Client.exceptions.InternalServerException
  • Omics.Client.exceptions.ThrottlingException
  • Omics.Client.exceptions.ValidationException
  • Omics.Client.exceptions.ResourceNotFoundException
  • Omics.Client.exceptions.AccessDeniedException
  • Omics.Client.exceptions.RequestTimeoutException