list_read_sets

Omics.Client.list_read_sets(**kwargs)

Retrieves a list of read sets.

See also: AWS API Documentation

Request Syntax

response = client.list_read_sets(
    filter={
        'createdAfter': datetime(2015, 1, 1),
        'createdBefore': datetime(2015, 1, 1),
        'name': 'string',
        'referenceArn': 'string',
        'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED'
    },
    maxResults=123,
    nextToken='string',
    sequenceStoreId='string'
)

Parameters

• filter (dict) --

  A filter to apply to the list.

  • createdAfter (datetime) --

    The filter's start date.

  • createdBefore (datetime) --

    The filter's end date.

  • name (string) --

    A name to filter on.

  • referenceArn (string) --

    A genome reference ARN to filter on.

  • status (string) --

    A status to filter on.

• maxResults (integer) -- The maximum number of read sets to return in one page of results.
• nextToken (string) -- Specify the pagination token from a previous request to retrieve the next page of results.
• sequenceStoreId (string) --

  [REQUIRED]

  The jobs' sequence store ID.

Return type

dict

Returns

Response Syntax

{
    'nextToken': 'string',
    'readSets': [
        {
            'arn': 'string',
            'creationTime': datetime(2015, 1, 1),
            'description': 'string',
            'fileType': 'FASTQ'|'BAM'|'CRAM',
            'id': 'string',
            'name': 'string',
            'referenceArn': 'string',
            'sampleId': 'string',
            'sequenceInformation': {
                'alignment': 'string',
                'generatedFrom': 'string',
                'totalBaseCount': 123,
                'totalReadCount': 123
            },
            'sequenceStoreId': 'string',
            'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED',
            'subjectId': 'string'
        },
    ]
}

Response Structure

• (dict) --

  • nextToken (string) --

    A pagination token that's included if more results are available.

  • readSets (list) --

    A list of read sets.

    • (dict) --

      A read set.

      • arn (string) --

        The read set's ARN.

      • creationTime (datetime) --

        When the read set was created.

      • description (string) --

        The read set's description.

      • fileType (string) --

        The read set's file type.

      • id (string) --

        The read set's ID.

      • name (string) --

        The read set's name.

      • referenceArn (string) --

        The read set's genome reference ARN.

      • sampleId (string) --

        The read set's sample ID.

      • sequenceInformation (dict) --

        Details about a sequence.

        • alignment (string) --

          The sequence's alignment setting.

        • generatedFrom (string) --

          Where the sequence originated.

        • totalBaseCount (integer) --

          The sequence's total base count.

        • totalReadCount (integer) --

          The sequence's total read count.

      • sequenceStoreId (string) --

        The read set's sequence store ID.

      • status (string) --

        The read set's status.

      • subjectId (string) --

        The read set's subject ID.

Exceptions

• Omics.Client.exceptions.InternalServerException
• Omics.Client.exceptions.ThrottlingException
• Omics.Client.exceptions.ValidationException
• Omics.Client.exceptions.ResourceNotFoundException
• Omics.Client.exceptions.AccessDeniedException
• Omics.Client.exceptions.RequestTimeoutException