Omics / Client / list_read_sets
list_read_sets#
- Omics.Client.list_read_sets(**kwargs)#
Retrieves a list of read sets.
See also: AWS API Documentation
Request Syntax
response = client.list_read_sets( sequenceStoreId='string', maxResults=123, nextToken='string', filter={ 'name': 'string', 'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED'|'PROCESSING_UPLOAD'|'UPLOAD_FAILED', 'referenceArn': 'string', 'createdAfter': datetime(2015, 1, 1), 'createdBefore': datetime(2015, 1, 1), 'sampleId': 'string', 'subjectId': 'string', 'generatedFrom': 'string', 'creationType': 'IMPORT'|'UPLOAD' } )
- Parameters:
sequenceStoreId (string) –
[REQUIRED]
The jobs’ sequence store ID.
maxResults (integer) – The maximum number of read sets to return in one page of results.
nextToken (string) – Specify the pagination token from a previous request to retrieve the next page of results.
filter (dict) –
A filter to apply to the list.
name (string) –
A name to filter on.
status (string) –
A status to filter on.
referenceArn (string) –
A genome reference ARN to filter on.
createdAfter (datetime) –
The filter’s start date.
createdBefore (datetime) –
The filter’s end date.
sampleId (string) –
The read set source’s sample ID.
subjectId (string) –
The read set source’s subject ID.
generatedFrom (string) –
Where the source originated.
creationType (string) –
The creation type of the read set.
- Return type:
dict
- Returns:
Response Syntax
{ 'nextToken': 'string', 'readSets': [ { 'id': 'string', 'arn': 'string', 'sequenceStoreId': 'string', 'subjectId': 'string', 'sampleId': 'string', 'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED'|'PROCESSING_UPLOAD'|'UPLOAD_FAILED', 'name': 'string', 'description': 'string', 'referenceArn': 'string', 'fileType': 'FASTQ'|'BAM'|'CRAM'|'UBAM', 'sequenceInformation': { 'totalReadCount': 123, 'totalBaseCount': 123, 'generatedFrom': 'string', 'alignment': 'string' }, 'creationTime': datetime(2015, 1, 1), 'statusMessage': 'string', 'creationType': 'IMPORT'|'UPLOAD', 'etag': { 'algorithm': 'FASTQ_MD5up'|'BAM_MD5up'|'CRAM_MD5up', 'source1': 'string', 'source2': 'string' } }, ] }
Response Structure
(dict) –
nextToken (string) –
A pagination token that’s included if more results are available.
readSets (list) –
A list of read sets.
(dict) –
A read set.
id (string) –
The read set’s ID.
arn (string) –
The read set’s ARN.
sequenceStoreId (string) –
The read set’s sequence store ID.
subjectId (string) –
The read set’s subject ID.
sampleId (string) –
The read set’s sample ID.
status (string) –
The read set’s status.
name (string) –
The read set’s name.
description (string) –
The read set’s description.
referenceArn (string) –
The read set’s genome reference ARN.
fileType (string) –
The read set’s file type.
sequenceInformation (dict) –
Details about a sequence.
totalReadCount (integer) –
The sequence’s total read count.
totalBaseCount (integer) –
The sequence’s total base count.
generatedFrom (string) –
Where the sequence originated.
alignment (string) –
The sequence’s alignment setting.
creationTime (datetime) –
When the read set was created.
statusMessage (string) –
The status for a read set. It provides more detail as to why the read set has a status.
creationType (string) –
The creation type of the read set.
etag (dict) –
The entity tag (ETag) is a hash of the object representing its semantic content.
algorithm (string) –
The algorithm used to calculate the read set’s ETag(s).
source1 (string) –
The ETag hash calculated on Source1 of the read set.
source2 (string) –
The ETag hash calculated on Source2 of the read set.
Exceptions
Omics.Client.exceptions.InternalServerException
Omics.Client.exceptions.ThrottlingException
Omics.Client.exceptions.ValidationException
Omics.Client.exceptions.ResourceNotFoundException
Omics.Client.exceptions.AccessDeniedException
Omics.Client.exceptions.RequestTimeoutException