Omics / Client / get_read_set_metadata

get_read_set_metadata#

Omics.Client.get_read_set_metadata(**kwargs)#

Gets details about a read set.

Request Syntax

response = client.get_read_set_metadata(
    id='string',
    sequenceStoreId='string'
)

Parameters:

id (string) –
[REQUIRED]

The read set’s ID.
sequenceStoreId (string) –
[REQUIRED]

The read set’s sequence store ID.

Return type:

dict

Returns:

Response Syntax

{
    'id': 'string',
    'arn': 'string',
    'sequenceStoreId': 'string',
    'subjectId': 'string',
    'sampleId': 'string',
    'status': 'ARCHIVED'|'ACTIVATING'|'ACTIVE'|'DELETING'|'DELETED'|'PROCESSING_UPLOAD'|'UPLOAD_FAILED',
    'name': 'string',
    'description': 'string',
    'fileType': 'FASTQ'|'BAM'|'CRAM'|'UBAM',
    'creationTime': datetime(2015, 1, 1),
    'sequenceInformation': {
        'totalReadCount': 123,
        'totalBaseCount': 123,
        'generatedFrom': 'string',
        'alignment': 'string'
    },
    'referenceArn': 'string',
    'files': {
        'source1': {
            'totalParts': 123,
            'partSize': 123,
            'contentLength': 123,
            's3Access': {
                's3Uri': 'string'
            }
        },
        'source2': {
            'totalParts': 123,
            'partSize': 123,
            'contentLength': 123,
            's3Access': {
                's3Uri': 'string'
            }
        },
        'index': {
            'totalParts': 123,
            'partSize': 123,
            'contentLength': 123,
            's3Access': {
                's3Uri': 'string'
            }
        }
    },
    'statusMessage': 'string',
    'creationType': 'IMPORT'|'UPLOAD',
    'etag': {
        'algorithm': 'FASTQ_MD5up'|'BAM_MD5up'|'CRAM_MD5up'|'FASTQ_SHA256up'|'BAM_SHA256up'|'CRAM_SHA256up'|'FASTQ_SHA512up'|'BAM_SHA512up'|'CRAM_SHA512up',
        'source1': 'string',
        'source2': 'string'
    }
}

Response Structure

(dict) –
- id (string) –
  
  The read set’s ID.
- arn (string) –
  
  The read set’s ARN.
- sequenceStoreId (string) –
  
  The read set’s sequence store ID.
- subjectId (string) –
  
  The read set’s subject ID.
- sampleId (string) –
  
  The read set’s sample ID.
- status (string) –
  
  The read set’s status.
- name (string) –
  
  The read set’s name.
- description (string) –
  
  The read set’s description.
- fileType (string) –
  
  The read set’s file type.
- creationTime (datetime) –
  
  When the read set was created.
- sequenceInformation (dict) –
  
  The read set’s sequence information.
  - totalReadCount (integer) –
    
    The sequence’s total read count.
  - totalBaseCount (integer) –
    
    The sequence’s total base count.
  - generatedFrom (string) –
    
    Where the sequence originated.
  - alignment (string) –
    
    The sequence’s alignment setting.
- referenceArn (string) –
  
  The read set’s genome reference ARN.
- files (dict) –
  
  The read set’s files.
  - source1 (dict) –
    
    The location of the first file in Amazon S3.
    - totalParts (integer) –
      
      The file’s total parts.
    - partSize (integer) –
      
      The file’s part size.
    - contentLength (integer) –
      
      The file’s content length.
    - s3Access (dict) –
      
      The S3 URI metadata of a sequence store.
      - s3Uri (string) –
        
        The S3 URI for each read set file.
  - source2 (dict) –
    
    The location of the second file in Amazon S3.
    - totalParts (integer) –
      
      The file’s total parts.
    - partSize (integer) –
      
      The file’s part size.
    - contentLength (integer) –
      
      The file’s content length.
    - s3Access (dict) –
      
      The S3 URI metadata of a sequence store.
      - s3Uri (string) –
        
        The S3 URI for each read set file.
  - index (dict) –
    
    The files’ index.
    - totalParts (integer) –
      
      The file’s total parts.
    - partSize (integer) –
      
      The file’s part size.
    - contentLength (integer) –
      
      The file’s content length.
    - s3Access (dict) –
      
      The S3 URI metadata of a sequence store.
      - s3Uri (string) –
        
        The S3 URI for each read set file.
- statusMessage (string) –
  
  The status message for a read set. It provides more detail as to why the read set has a status.
- creationType (string) –
  
  The creation type of the read set.
- etag (dict) –
  
  The entity tag (ETag) is a hash of the object meant to represent its semantic content.
  - algorithm (string) –
    
    The algorithm used to calculate the read set’s ETag(s).
  - source1 (string) –
    
    The ETag hash calculated on Source1 of the read set.
  - source2 (string) –
    
    The ETag hash calculated on Source2 of the read set.

Exceptions

Omics.Client.exceptions.InternalServerException
Omics.Client.exceptions.ThrottlingException
Omics.Client.exceptions.ValidationException
Omics.Client.exceptions.ResourceNotFoundException
Omics.Client.exceptions.AccessDeniedException
Omics.Client.exceptions.RequestTimeoutException